QED's online tools for molecular biology



DNA - Genome

AsDb - Aberrant splicing database.
ACUTS - Ancient conserved untranslated DNA sequences.
CUD - Codon usage database.
DDBJ - DNA Database of Japan.
Dot Plot - Compare a DNA sequence with itself.
EMBL - Nucleotide sequence database.
EMNEW - Index of new EMBL sequences.
ENTREZ nucleotide EPD - Eucaryotic Promoter Database.
FASTA - Compare a nucleic acid sequence to a nucleotide sequence database.
GDB - The official world-wide database for the annotation of the human genome.
Gene Finder - Predict gene structure, internal exons and splicing sites in DNA and exon-exon junction in cDNA.
Genetic Code Viewer - Genetic code viewer at EBI
GenLang - A syntactic pattern recognition system to find genes and other higher-order features in biological sequence data.
GOBASE - Organelle genome.
Grail - Analysis of the protein coding potential of a DNA sequence.
HOVERGEN - Database of homologous vertebrate genes.
ISIS - Intron sequence and information system.
NDB - 3D structure of nucleic acids database.
OMA Orthologs Matrix Project - Massive cross-comparison of complete genomes.
JCSG Primer Selection Tool - Select PCR primers.
Pedestrian Guide - to analysing sequence databases
PLACE - Plant cis-acting regulatory DNA elements.
SensSpec.exe - Clustering spoligotypes and MIRU-VNTRs and estimating sensitivity and specificity.
Sequence similarity searches primer.
Sequence Translation - ExPasy interface and database.
TelDB - Multimedia Telomere Resource.
TFASTA - Match a protein sequence against all six frames of GenBank sequences.

ORFeome
ORFeome - The CCSB human ORFeome cloning project.

Epigenome
HEP - Human epigenome project.

Phylogenetcis
EGO - Eukaryotic gene orthologs.
InParanoid - Eukaryotic ortholog groups.
Metazome - Phylogenomic analysis of metazoan gene families.
OMA - Orthologs matrix project.
TreeBASE - Relational database of phylogenetic information.
TreeFam - Tree families database of phylogenetic trees of animal genes.
POWER - Perform phylogenetic analysis with The Phylogenetic web repeater.

Nomenclature
GO - Gene Ontology Consortium
HUGO - Giving unique and meaningful names to every human gene.

DNA Patents and Legal Issues
Ag Patents - Agricultural and biotechnology patents from the USDA.
DPD - Database of DNA patents.
Esp@cenet - Patent information database.
US PTO - Database of USA patents and trademarks.

Human Chromosome Launchpads
1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 18 , 19 , 20 , 21 , 22 , X , Y ,

Human Genetics
OMIM - Mendelian inheritance, human.
GENATLAS - Human genes atlas.
GeneClinics - Medical genetics knowledge base.
GDB - HUman genome database.
GeneCards - Integrated human gene database.
UDB - Human genome mapping.
Ensembl Human genome browser.
UCSC human genome draft.
TIGR HGI - TIGR Human Gene Index.
Hs UniGene - Human EST clusters.
STACK - Consensus human ESTs.
Allgenes.org - Human predicted genes.
GenLink - Human genetics.
GeneLynx - Portal to the human genome.
HUGE - Human gene-encoded large proteins cDNA.
HUNT - Novel humna transcripts.
CGAP - Cancer genome anatomy projects.
SCDb - Stem cells.
Homophila - Human Disease to Drosophila gene.

Contact Webmaster for suggestions.