QED's online tools for molecular biology



Genome Databases - Plants and Animals

Plant Genomes
NAL - AGIS - Access to many plant genome databases.
PLACE - Plant cis-acting regulatory DNA elements.
TAIR - The Arabidopsis information resource.
MATDB - Arabidopsis thaliana.
TIGR At - Arabidopsis thaliana, TIGR.
AMPL - Arabidopsis membrane protein library.
Arabidopsis at PlaCe - P450, glucosyltransferases, etc.
Gramene - A comparative mapping for grains.
RGP - Rice genome research program.
Oryzabase - Japanese rice genome.
Rice genome project, Wisconsin.
Rice-research.org - Rice genome, Monsanto.
TIGR OsGI - TIGR Rice Genome project.
BeanGenes - Beans genome.
Chlamydomonas resource center.
ChlamyDB - Chlamydomonas reinhardtii genome.
CoffeeDNA - Coffee genomics.
CottonDB - Cotton genome.
MaizeDb - Maize genome.
Pisum sativum genome.
TIGR Potato - TIGR potato functional genomics project.
TIGR GmGI - TIGR soybean gene index.
Snapdragon genome.
SorghumDB - Sorghum genome.
SoyBase - Soybean genome.
SoyBase Metabolism - Metabolic subset of the soybean genome.
TIGR LeGI - TIGR Tomato gene index.
Dendrome - Forest trees genomes.

Invertebrate Genomes
WormBase - C.elegans.
C.elegans WWW server - University of Texas Southwestern.
C.elegans Mitochondrial Directory - C.elegans genes for mitochondrial proteins.
NEXTDB - Nematode expression patterns.
WorfDB - C. elegans ORFeome cloning project.
DictyBase - Dictyostelium discoideum.
DictyDb - Dictyostelium discoideum.
Dictystelium Genome - BCM.
Dictyostelium discoideum - IENA.
Dicty_cDB - Dictyostelium discoideum cDNAs.
Cone shells.
Parasite genomes
PlasmoDB - P.falciparum genome
Malaria - WHO
P.falciparum - Sanger.
PFDB - Plasmodium falciparum, TIGR.
Plasmodium falciparum - Gene sequence tags.
Giardia lamblia
LGN - Leishmania genome network.
Toxoplasma gondii
Trypanosoma brucei
Trypanosoma cruzi
kDNA - Kinetoplast minicircle.

Vertebrate Genomes
OMIA - Online Mendelian Inheritance in Animals
MGI - Mouse genome informatics.
Ensembl Mouse genome browser
Mm UniGene - Mouse transcripts in GenBank (EST clusters).
MGC - Mammalian gene collection.
Mouse gene knockouts
RGD - Rat genome.
RatMAP - Rat genome.
BOVMAP - Bovine genome database.
DGP - Dog genome project.
MIS - Mendelian inheritance in sheep.
Ark-Cat, Ark-Chicken, Ark-Cow, Ark-Deer, Ark-Horse, Ark-Pig, Ark-Sheep, Ark-Turkey, Ark-Tilapia, Ark-Salmon.
FishBase
- Global information system on fishes.
Fugu genome project
Fugu - HGMP resource centre Fugu project.
Ensembl Fugu genome browser
Medakafish

The fish net - Zebrafish server.
Ensembl Zebrafish genome browser

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