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Protein - Proteome GPofYPF - Global profiling of yeast protein function. Human Protein Atlas - Expression and localization of proteins in normal human tissues and cancer cells. MassSearch - Search SwissProt or EMBL databases by protein mass after digestion. MASCOT - Protein mass spectrometry database. Phospepsort - Digest phosphorylated peptide sequences. pI/Mw - Compute the theoretical pI and molecular weight of a protein sequence. PIR - Protein identification resource database. PMD - Protein Mutant Database. PAT - Protein Analysis Toolkit. TagIdent (GuessProt) - Suggest protein candidates, given pI and Mw. Swiss-2DPage - Two-dimensional polyacrylamide gel electrophoresis database. Sequence AA CompIdent - Protein identification in SwissProt using amino acid composition. AA CompSim - Compare the amino acid composition of a SwissProt entry with other entries at ExPASy. ALIGN - compendium of sequence alignments: it is a companion resource to PRINTS. ASC - Analytic surface calculation of PDB protein structures. BLITZ - Fast comparison of protein sequences against SwissProt. BLOCKS - Analyze and compare highly conserved regions in proteins. BMCD - Biological macromolecule crystallization database. BOXSHADE - Attractive printing and shading of multiple-sequence alignments. Also accessible from ch.EMBnet.org ENTREZ protein ENTREZ conserved domains FASTPAT - FASTA-based pattern database search. HSSP - Homology-derived secondary structure of proteins. MOTIF - Search patterns in protein sequences. PLALIGN - Plots out a graph of the sequence alignments. OWL - Non-redundant protein sequence database. PDB - Protein Data Bank. PRINTS - Protein motif fingerprints database. ProDom - A protein domain database. ProfileScan - Search a sequence against a library of profiles. PROSITE - Protein sites and patterns database. PSA - Protein sequence analysis for sequences of unknown structure. PSORT - Predict protein sorting signals coded in amino acid sequences. REPRO - Recognition of protein sequence repeats. SAPS - Statistical analysis of protein sequences. SCANPS - Scan protein sequences. Swiss-Model - Automated Protein Modelling at ExPASy, Switzerland SwissProt - Protein Sequence Database (+ Weekly Updates) at ExPASy, Switzerland Swiss-Shop - Automated SwissProt and Prosite information queries. TMAP - Identification of transmembrane segments on a protein sequence. TreeGen - Tree generation from distance data. Structure 3D-ALI - Database relating proteins structures and sequences BioImage - Biological image data on macromolecules. BioMagResBank - A database of NMR-derived protein structures. BMM Domain Server - Biomolecular modelling laboratory protein domain server CCDC - Cambridge Crystallographic Data Center. CATH - Protein structure classification. Coils - Prediction of coiled-coil regions in protein sequences. ENTREZ structure ENTREZ 3D domains ICBS - A database of protein-protein interactions mediated by interchain ß-sheet formation. Kinemage - "Kinetical Images" by protein type. Macromolecular Movements - Database of macromolecular movements. ModBase - Comparative protein structure models. Molecules To Go - Molecules To Go (formerly known as Molecules R Us). MutaProt - Comparison of PDB files which differ by point mutations. nnPredict - Predict protein secondary structure. PredictProtein - Predict protein secondary structure. PDB - Protein Data Bank Powder Structure Solution Program - For crystallographers. ReLiBase - Receptor/ligand complexes. SCOP - Structural classification of proteins. SPIN-PP - A database of all protein-protein interfaces present in the PDB. SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules. SWISS-MODEL Repository - Automatically generated protein models. TOPS - Protein topology atlas. Antibodies, Enzymes, Protein Classes AbCheck - Test an antibody sequence against the Kabat database. EC Enzyme - Use to work through the Enzyme Commission database of known enzymes. EMP Compound - Selkov enzyme and metabolic pathway database. ENZYME - The Enzyme Data Bank at ExPASy, Switzerland Enzyme Structures Database - Structures of enzymes deposited in the PDB at UCL-London. Kabat - Database of proteins of immunological interest. LIGAND - Ligand chemical database for enzyme reactions. Metabolic Database - Metabolic reactions and pathways. MHCPEP - Database of major histocompatibility complex (MHC) binding peptides. ReBase - Restriction enzyme database TFD - Transcription factor database. TMBASE - Transmembrane protein database. Post-Translational Modifications DSDBASE - Disulfide database (derived from 3D data). GlycoSuiteDB - Database of glycan structures. IPID MAPS - Lipid metabolites and pathways strategy. O-GlycBase - O-glycosylated proteins database. PhosphoBase - Phosphorylation sites database. Bacteria/Archaea Phosp. Sites - Bacterial and archaeal phosphorylation sites resource. DOLOP - Bacterial lipoprotein database. RESID - Amino acid modifications. Delta Mass - Mass of post-translational modifications Interactome DIP - Database of interacting proteins. BioGRID - General repository for interaction datasets. HiMAP - Dynamic browser for the human protein-protein interaction map. HPID - Human protein interaction database. HUGE ppi - A Database of protein-protein interactions between large proteins. Interactome - Dynamic browser for the human protein-protein interaction map. Interaction Proteom (MINT) - Molecular INTeraction database. KDBI - Kinetic Data of Bio-molecular Interaction (KDBI) is a collection of experimentally determined kinetic data described in the literature. YIPD - Yeast interacting proteins databse. PathCalling - Yeast interaction database. Contact Author. |