QED's online tools for molecular biology



Organismal Proteomes
YTPdb - Yeast transport proteins.
YMPL - Yeast membrane pProtein library.
Yeast mitochondrial proteome
YEASTGFP - Yeast GFP fusion localization.
WormPep - C.elegans proteins.
Malaria parasite metabolic pathways
Completed archaeal proteomes. - Swiss-Prot.

Specific Proteins
Human ABC transporters
ADAMTS - Apte lab ADAMTS and ADAMTSL.
Human Albumin Website
Allergen sequence db
Allergome - Allergenic molecules.
SDAP - Structural database of allergenic proteins.
Alginate genes - Pseudomomonas alginate production.
AARSDB - Aminoacyl-tRNA synthetases.
AMSDb - Antimicrobial sequences.
AraC-XylS - AraC/xylS transcriptional regulator family.
TFII - Basal transcription factors.
BCGD - Breast cancer genes.
BRENDA - Db of enzyme functional data.
EF-hand CaBP - EF-hand calcium-binding proteins.
CAZy - Carbohydrate-active enzymes.
CBS domain - Cystathionine beta synthases.
Chaperonin - GroEL and GroES chaperonins.
cpnDB - Chaperonins.
CSDBase - Cold shock domain.
COPE - Cytokines Onine Pathfinder.
dbCFC - Cytokine family.
R&D Systems' Cytokine mini reviews
DExH/D protein family db
DnaB helicase
DPInteract - DNA-Proteins interactions.
EMP - Enzymes and metabolic pathways.
Worthington enzyme manual
Eph - Eph receptor tyrosine kinases and their ligands (ephrins).
EpoDB - Erythropoiesis gene expression.
ESTHER - Esterases and alpha/beta hydrolase enzymes.
Expansins web site
Modules - Extracellular proteins modules (domains).
FADPNR - FAD-dependent pyridine nucleotide oxidoreductases.
Flavodoxins
FYVE finger domain
Globin - Globin genes.
GPCRDB - G protein-coupled receptors.
HORDE - Human olfactory receptors.
GRR - Glucocorticoid receptors.
Arabidopsis Glucosyltransferases
GnRH - Gonadotropin-releasing hormones (GnRH).
Histone - Histones.
HIVdb - HIV proteases.
IMGT - ImMunoGeneTics.
InBase - Inteins db from the NEB.
Integrins
KEGG - Kyoto Encyclopedia of Genes and Genomes
Klotho - Biochemical compounds.
LGIC - Ligand gated ion channel subunits.
LED - Lipase engineering.
MDB - Metalloproteins.
MT - Metallothioneins.
MHCPEP - MHC binding peptides.
Mitochondrial carriers, Nelson lab
MRR - Mineralocorticoid receptors.
Mutator - Transposases, mutators.
MutS - MutS family.
Neurotrophic factors
NPD - Nuclear proteins.
NucleaRDB - Nuclear receptors.
P450 pages, Nelson lab
P450 - P450-containing systems.
Arabidopsis P450 Web site
IARC p53 db - Somatic p53 mutations, IRB.
PDE - Phosphodiesterases.
Plant Peroxidases
MEROPS - Peptidases.
Prolysis - Proteases and inhibitors.
KinBase
PKR - Protein kinases.
PatBase - P-type ATPases.
PPAR - Peroxisome proliferator-activated receptors.
PPDB - Phosphoproteins.
Proteoglycans
Phytochromes - Phytochrome sequences.
PUMA2 - Evolutionary analysis of metabolism.
RecA - RecA proteins.
REBASE - Restriction enzymes and methylases.
RNase P - Ribonuclease P.
SPAD - Signaling pathways.
SRPDB - Signal recognition particles.
SNF2 - SNF2 family.
TRANSFAC - Transcription factors.
TRANSPATH - Signal transduction.
TC-DB - Transport Classification System.
WD-repeat - WD-repeat proteins.
Wnt gene homepage
WormPep - C.elegans proteins.
YTPdb - Yeast Transport Proteins.

Toxins
Conotoxins - Information on conotoxins from a Web site on cone shells
International venom and toxin db
Scorpion - Scorpion toxin db
Snake - Snake toxin db

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