QED's online tools for molecular biology



RNA - Transcriptome

dbEST - Database of expressed sequence tags at NCBI
Transcriptome Database (Yeast) - Searchable yeast transcriptome.
DTDB - Human transcript database.

rRNAs, enzymatic RNAs, other RNAs
5S rRNA - 5S ribosomal RNA database.
European rRNA Database
gRNAs Database - Guide RNA database.
lsu rRNA - Large ribosomal subunit at the European ribosomal RNA database.
RDP - Ribosomal database project
RDP - rRNA operons in prokaryotes.
RNA editing - RNA editing site.
RNAmod - RNA modifications.
RNA Secondary Structures - Information on Group I introns and rRNA.
RNA Secondary Structure Preduction
ssu rRNA - Databases of small ribosomal subunita RNA sequences.
tmRNA Website - tmRNA gene sequences.
tRNA - tRNA compilation.
Yeast snoRNA - Yeast small nucleolar RNAs.

miRNAs, siRNAs
Argonaute - Database for gene regulation by mammalian micro-RNAs.
HuSiDa - Human siRNA Database.
Human microRNA targets - Human, Drosophila and zebra fish miRNA targets.
miRNA::Base - miRBase: the home of microRNA data.
miRNAMap - Genomic maps for microRNA precursors and their mapping to targets in vertebrate genomes.

Micro-Arrays
ArrayExpress - MicroArray informatics.
ExpressDB - Yeast and E.coli RNA expression database.
GeneX - Gene expression project.
GEO - Gene expression omnibus.
MILANO - Microarrays (literature-based annotation).
RAD - Database of RNA abundance.
SMD - Stanford microarray database.


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